Yvan Le Bras

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Foundations of Data Science
• Topic: Ecology
• Topic: Sequence analysis
• Learning Pathway: Introduction to Galaxy and Ecological data analysis
• Learning Pathway: Gallantries Grant - Intellectual Output 4 - Data analysis and modelling for evidence and hypothesis generation and knowledge discovery

Tutorials

• Ecology / Species distribution modeling ✍️ 🧐
• Ecology / RAD-Seq to construct genetic maps ✍️ 🧐
• Ecology / Ecoregionalization workflow tutorial ⚙️ 🧐
• Ecology / RAD-Seq de-novo data analysis ✍️ 🧐
• Ecology / Regional GAM ✍️ 🧐
• Ecology / Compute and analyze biodiversity metrics with PAMPA toolsuite ✍️ 🧐
• Ecology / Cleaning GBIF data using OpenRefine ✍️ 🧐
• Ecology / Phylodiversity analysis quick tutorial ✍️ 🧐
• Ecology / QGIS Web Feature Services ✍️ 🧐
• Ecology / Taxonomic Analysis of eDNA 🧐
• Ecology / Metabarcoding/eDNA through Obitools ✍️ 🧐
• Ecology / Biodiversity data exploration ✍️ 🧐
• Ecology / Sentinel 2 biodiversity ✍️ 🧐
• Ecology / RAD-Seq Reference-based data analysis ✍️ 🧐
• Ecology / Obis marine indicators ✍️ 🧐
• Ecology / Visualize EBV cube data with Panoply netCDF viewer ✍️ 🧐
• Ecology / Cleaning GBIF data for the use in Ecology ✍️ 🧐
• Ecology / Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS ✍️ 📝
• Ecology / Life Traits Ecoregionalization workflow ✍️ 🧐
• Ecology / Champs blocs indicators ✍️ 🧐
• Ecology / Data submission using ENA upload Tool ✍️ ⚙️ 🧐
• Ecology / Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities ✍️ 📝 🧐
• Galaxy Server administration / Galaxy Monitoring with Reports 🧐
• Contributing to the Galaxy Training Material / Creating a new tutorial 🧐
• Epigenetics / ATAC-Seq data analysis 🧐
• Using Galaxy and Managing your Data / RStudio in Galaxy 🧐
• Climate / Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools 🧐
• Climate / Visualize Climate data with Panoply netCDF viewer 🧐
• Climate / Pangeo Notebook in Galaxy - Introduction to Xarray 🧐
• Introduction to Galaxy Analyses / Introduction to Genomics and Galaxy 🧐
• FAIR Data, Workflows, and Research / RO-Crate in Python 🧐
• FAIR Data, Workflows, and Research / Best practices for workflows in GitHub repositories 🧐
• FAIR Data, Workflows, and Research / Exporting Workflow Run RO-Crates from Galaxy 🧐
• FAIR Data, Workflows, and Research / Submitting workflows to LifeMonitor 🧐
• Development in Galaxy / Galaxy Interactive Tools ✍️
• Ecology / Production d'indicateurs champs de bloc ✍️ 🧐

Slides

• Galaxy Server administration / Server: Other 🧐
• Epigenetics / Introduction to DNA Methylation data analysis ✍️
• Climate / Pangeo ecosystem 101 for everyone 🧐
• Climate / The Pangeo ecosystem 🧐
• Variant Analysis / Introduction to Variant analysis ✍️
• Assembly / De Bruijn Graph Assembly 🧐

FAQs

• It says I already have an account when registering for ecology.usegalaxy.eu
• Changer le type de données
• Importer via un lien
• Créer un nouvel history
• Launch RStudio
• Stop RStudio

Video Recordings

• Ecology / Metabarcoding/eDNA through Obitools 💬 🗣

GitHub Activity

github Issues Reported

113 Merged Pull Requests

See all of the github Pull Requests and github Commits by Yvan Le Bras.

• Update metadata.yaml to add Galaxy Ecology ref & data access and mngt
  ecology
• Update tutorial.md fix typo.. on the title...
  ecology
• try to rePR phylodiversity tuto
  template-and-tools
  ecology
• Openrefine tuto addition
  template-and-tools
  ecology
• Update tutorial.md good link ?
  fair

Reviewed 38 PRs

We love our community reviewing each other's work!

• try to rePR phylodiversity tuto
  template-and-tools
  ecology
• Add EDAM to OBS marine indicators tutorial
  ecology
• new tutorial life traits ecoregionalization
  template-and-tools
  ecology
• [New Tutorial] Taxonomic Analysis of eDNA
  template-and-tools
  ecology
• OpenRefine Tutorial Update pt 2
  ecology

News

External Links

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