Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

For any question or discussions related to this topic, or to connect with others in the community, please visit the community chat:

comment   Community Matrix Chat

Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Follow topic updates rss-feed with our RSS Feed

Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Anika Erxleben

Nicola Soranzo

Delphine Lariviere

Guillaume Gautreau

Nathan Dunn

Erwan Corre

Anthony Bretaudeau

Björn Grüning

Saskia Hiltemann

Maria Doyle

Valentin Loux

Laura Leroi

Niall Beard

Esteban Perez-Wohlfeil

Simon Bray

Twishi Gulati

Anna Syme

Deepti Varshney

Cristóbal Gallardo

Jasper Ouwerkerk

Anton Nekrutenko

Felicitas Kindel

Torsten Seemann

Hélène Chiapello

Miaomiao Zhou

Helena Rasche

Jonathan Kreplak

Gildas Le Corguillé

Bérénice Batut

Simon Gladman

Mateo Boudet

Paul Zierep

Bazante Sanders

Teresa Müller

Ekaterina Polkh

Kenji Fujihara

Stéphanie Robin

Romane LIBOUBAN

William Durand

Alexandre Cormier

Funding

These individuals or organisations provided funding support for the development of this resource

Avans

ABRomics

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

ELIXIR Europe

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

IFB