Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Laura Leroi

Felicitas Kindel

Saskia Hiltemann

Twishi Gulati

Anton Nekrutenko

Stéphanie Robin

Ekaterina Polkh

Delphine Lariviere

Björn Grüning

Jasper Ouwerkerk

Nicola Soranzo

Niall Beard

Deepti Varshney

Romane LIBOUBAN

Teresa Müller

Hélène Chiapello

Paul Zierep

Bazante Sanders

Esteban Perez-Wohlfeil

Maria Doyle

Helena Rasche

Alexandre Cormier

Simon Gladman

Valentin Loux

Nathan Dunn

Erwan Corre

Torsten Seemann

Anthony Bretaudeau

Bérénice Batut

Kenji Fujihara

Mateo Boudet

Guillaume Gautreau

Gildas Le Corguillé

Miaomiao Zhou

Anna Syme

Simon Bray

Cristóbal Gallardo

Anika Erxleben

Jonathan Kreplak

William Durand

Funding

These individuals or organisations provided funding support for the development of this resource

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Avans

ELIXIR Europe

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

IFB

ABRomics