Pratik Jagtap

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Proteomics

Tutorials

• Proteomics / EncyclopeDIA ✍️
• Proteomics / Neoantigen 5b: IEDB binding PepQuery Validated Neopeptides 📝
• Proteomics / Clinical Metaproteomics 2: Discovery 📝
• Proteomics / Neoantigen 5a: Predicting HLA Binding 📝
• Proteomics / Neoantigen 3: PepQuery2 Verification 📝
• Proteomics / metaQuantome 2: Function ✍️
• Proteomics / Clinical Metaproteomics 4: Quantitation 📝
• Proteomics / metaQuantome 1: Data creation ✍️
• Proteomics / Neoantigen 1a: Fusion-Database-Generation 📝
• Proteomics / Clinical Metaproteomics 5: Data Interpretation 📝
• Proteomics / Neoantigen 4: Variant Annotation 📝
• Proteomics / Proteogenomics 2: Database Search ✍️
• Proteomics / Clinical Metaproteomics 1: Database-Generation 📝 🧐
• Proteomics / Proteogenomics 3: Novel peptide analysis ✍️
• Proteomics / Neoantigen 1b: Non-Reference-Database-Generation 📝
• Proteomics / Metaproteomics tutorial ✍️
• Proteomics / metaQuantome 3: Taxonomy ✍️
• Proteomics / Proteogenomics 1: Database Creation ✍️
• Proteomics / Clinical Metaproteomics 3: Verification 📝
• Proteomics / Neoantigen 2: Database merge and FragPipe discovery 📝
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data ✍️
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) ✍️

Slides

• Microbiome / Introduction to metatranscriptomics ✍️

Video Recordings

• Proteomics / Metaproteomics tutorial 🗣
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data 🗣
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) 🗣

Events

• Galaxy Training Academy 2025 🧑‍🏫
• Galaxy Training Academy 2024 🧑‍🏫

GitHub Activity

github Issues Reported

External Links

Favourite Topics

Favourite Formats